KDM2B protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

KDM2B

Lysine demethylase 2B. (756 aa)

Predicted Functional Partners:

PCGF1

0.992

RYBP

0.990

SKP1

0.984

ENSCAPP00000011556

0.984

RING1

0.974

ENSCAPP00000009463

0.966

ENSCAPP00000018370

0.966

ENSCAPP00000013591

0.965

PCGF3

0.964

PCGF2

0.964

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000009463	ENSCAPP00000011556	ENSCAPP00000009463	ENSCAPP00000011556	annotation not available	annotation not available	0.986
ENSCAPP00000009463	ENSCAPP00000013591	ENSCAPP00000009463	ENSCAPP00000013591	annotation not available	annotation not available	0.966
ENSCAPP00000009463	KDM2B	ENSCAPP00000009463	ENSCAPP00000001666	annotation not available	Lysine demethylase 2B.	0.966
ENSCAPP00000009463	PCGF1	ENSCAPP00000009463	ENSCAPP00000005990	annotation not available	Polycomb group ring finger 1.	0.991
ENSCAPP00000009463	PCGF2	ENSCAPP00000009463	ENSCAPP00000010556	annotation not available	Polycomb group ring finger 2.	0.988
ENSCAPP00000009463	PCGF3	ENSCAPP00000009463	ENSCAPP00000010538	annotation not available	Polycomb group ring finger 3.	0.989
ENSCAPP00000009463	RING1	ENSCAPP00000009463	ENSCAPP00000010939	annotation not available	Ring finger protein 1.	0.997
ENSCAPP00000009463	RYBP	ENSCAPP00000009463	ENSCAPP00000012642	annotation not available	RING1 and YY1 binding protein.	0.990
ENSCAPP00000009463	SKP1	ENSCAPP00000009463	ENSCAPP00000009508	annotation not available	S-phase kinase associated protein 1.	0.917
ENSCAPP00000011556	ENSCAPP00000009463	ENSCAPP00000011556	ENSCAPP00000009463	annotation not available	annotation not available	0.986
ENSCAPP00000011556	ENSCAPP00000013591	ENSCAPP00000011556	ENSCAPP00000013591	annotation not available	annotation not available	0.984
ENSCAPP00000011556	ENSCAPP00000018370	ENSCAPP00000011556	ENSCAPP00000018370	annotation not available	annotation not available	0.986
ENSCAPP00000011556	KDM2B	ENSCAPP00000011556	ENSCAPP00000001666	annotation not available	Lysine demethylase 2B.	0.984
ENSCAPP00000011556	PCGF1	ENSCAPP00000011556	ENSCAPP00000005990	annotation not available	Polycomb group ring finger 1.	0.996
ENSCAPP00000011556	PCGF2	ENSCAPP00000011556	ENSCAPP00000010556	annotation not available	Polycomb group ring finger 2.	0.995
ENSCAPP00000011556	PCGF3	ENSCAPP00000011556	ENSCAPP00000010538	annotation not available	Polycomb group ring finger 3.	0.995
ENSCAPP00000011556	RING1	ENSCAPP00000011556	ENSCAPP00000010939	annotation not available	Ring finger protein 1.	0.996
ENSCAPP00000011556	RYBP	ENSCAPP00000011556	ENSCAPP00000012642	annotation not available	RING1 and YY1 binding protein.	0.971
ENSCAPP00000011556	SKP1	ENSCAPP00000011556	ENSCAPP00000009508	annotation not available	S-phase kinase associated protein 1.	0.959
ENSCAPP00000013591	ENSCAPP00000009463	ENSCAPP00000013591	ENSCAPP00000009463	annotation not available	annotation not available	0.966