STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DKC1Dyskerin pseudouridine synthase 1. (456 aa)    
Predicted Functional Partners:
SHQ1
SHQ1, H/ACA ribonucleoprotein assembly factor.
   
 0.999
NOP58
NOP58 ribonucleoprotein.
  
 0.999
ENSCAPP00000014662
annotation not available
   
 0.999
NAF1
Nuclear assembly factor 1 ribonucleoprotein.
   
 0.999
FBLL1
Fibrillarin like 1.
   
 0.998
FBL
Fibrillarin.
   
 0.998
ENSCAPP00000001291
annotation not available
   
 0.997
SNU13
Small nuclear ribonucleoprotein 13.
  
 0.997
ENSCAPP00000007368
annotation not available
   
 0.997
ENSCAPP00000012618
annotation not available
   
 0.997
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.