RNASEH2A protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RNASEH2A

Ribonuclease H2 subunit A. (189 aa)

Predicted Functional Partners:

RNASEH2B

0.999

PCNA

0.967

ENSCAPP00000002185

0.951

POLE

0.923

TYMS

0.908

ENSCAPP00000009470

0.905

ENSCAPP00000016271

0.872

PRIM2

0.857

ENSCAPP00000002903

0.852

ORC1

0.851

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000002185	ENSCAPP00000016271	ENSCAPP00000002185	ENSCAPP00000016271	annotation not available	annotation not available	0.423
ENSCAPP00000002185	PCNA	ENSCAPP00000002185	ENSCAPP00000014064	annotation not available	Proliferating cell nuclear antigen.	0.922
ENSCAPP00000002185	POLE	ENSCAPP00000002185	ENSCAPP00000011346	annotation not available	DNA polymerase epsilon, catalytic subunit.	0.640
ENSCAPP00000002185	RNASEH2A	ENSCAPP00000002185	ENSCAPP00000001671	annotation not available	Ribonuclease H2 subunit A.	0.951
ENSCAPP00000002185	RNASEH2B	ENSCAPP00000002185	ENSCAPP00000008241	annotation not available	Ribonuclease H2 subunit B.	0.599
ENSCAPP00000002185	TYMS	ENSCAPP00000002185	ENSCAPP00000001574	annotation not available	Thymidylate synthetase.	0.924
ENSCAPP00000002903	ENSCAPP00000009470	ENSCAPP00000002903	ENSCAPP00000009470	annotation not available	annotation not available	0.999
ENSCAPP00000002903	ORC1	ENSCAPP00000002903	ENSCAPP00000000938	annotation not available	Origin recognition complex subunit 1.	0.999
ENSCAPP00000002903	PCNA	ENSCAPP00000002903	ENSCAPP00000014064	annotation not available	Proliferating cell nuclear antigen.	0.941
ENSCAPP00000002903	POLE	ENSCAPP00000002903	ENSCAPP00000011346	annotation not available	DNA polymerase epsilon, catalytic subunit.	0.994
ENSCAPP00000002903	PRIM2	ENSCAPP00000002903	ENSCAPP00000007900	annotation not available	DNA primase subunit 2.	0.967
ENSCAPP00000002903	RNASEH2A	ENSCAPP00000002903	ENSCAPP00000001671	annotation not available	Ribonuclease H2 subunit A.	0.852
ENSCAPP00000002903	TYMS	ENSCAPP00000002903	ENSCAPP00000001574	annotation not available	Thymidylate synthetase.	0.881
ENSCAPP00000009470	ENSCAPP00000002903	ENSCAPP00000009470	ENSCAPP00000002903	annotation not available	annotation not available	0.999
ENSCAPP00000009470	ORC1	ENSCAPP00000009470	ENSCAPP00000000938	annotation not available	Origin recognition complex subunit 1.	0.999
ENSCAPP00000009470	PCNA	ENSCAPP00000009470	ENSCAPP00000014064	annotation not available	Proliferating cell nuclear antigen.	0.978
ENSCAPP00000009470	POLE	ENSCAPP00000009470	ENSCAPP00000011346	annotation not available	DNA polymerase epsilon, catalytic subunit.	0.993
ENSCAPP00000009470	PRIM2	ENSCAPP00000009470	ENSCAPP00000007900	annotation not available	DNA primase subunit 2.	0.973
ENSCAPP00000009470	RNASEH2A	ENSCAPP00000009470	ENSCAPP00000001671	annotation not available	Ribonuclease H2 subunit A.	0.905
ENSCAPP00000009470	TYMS	ENSCAPP00000009470	ENSCAPP00000001574	annotation not available	Thymidylate synthetase.	0.706