STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRMT1tRNA methyltransferase 1. (545 aa)    
Predicted Functional Partners:
RTF2
Replication termination factor 2.
    
   0.959
ENSCAPP00000012029
annotation not available
    
   0.868
EPRS1
glutamyl-prolyl-tRNA synthetase 1.
   
   0.867
ENSCAPP00000014784
annotation not available
   
 
 0.852
ENSCAPP00000010607
annotation not available
    
   0.848
ENSCAPP00000014188
annotation not available
   
   0.845
DARS1
aspartyl-tRNA synthetase 1.
    
   0.816
ENSCAPP00000017114
annotation not available
   
   0.803
KIF20B
Kinesin family member 20B.
    
   0.800
KIF20A
Kinesin family member 20A.
    
   0.800
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.