STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMT1tRNA methyltransferase 1. (545 aa)    
Predicted Functional Partners:
TBL3
Transducin beta like 3.
   
    0.771
RTF2
Replication termination factor 2.
    
   0.753
METTL1
Methyltransferase like 1.
   
 
 0.737
RPF2
Ribosome production factor 2 homolog.
   
  
 0.720
NSUN2
NOP2/Sun RNA methyltransferase 2.
   
 
 0.713
UTP4
UTP4 small subunit processome component.
   
    0.681
WDR46
WD repeat domain 46.
   
    0.673
BOP1
BOP1 ribosomal biogenesis factor.
   
    0.672
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
   
    0.671
GRWD1
Glutamate rich WD repeat containing 1.
   
    0.669
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.