STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000001689annotation not available (76 aa)    
Predicted Functional Partners:
TMED10
Transmembrane p24 trafficking protein 10.
   
 0.999
TMED3
Transmembrane p24 trafficking protein 3.
   
 0.962
ENSCAPP00000016386
annotation not available
   
 0.962
SURF4
Surfeit 4.
   
 0.918
SEC13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.872
LMAN1
Lectin, mannose binding 1.
   
 0.845
COPG1
Coatomer protein complex subunit gamma 1.
    
 0.838
SEC23A
Sec23 homolog A, coat complex II component.
   
 0.836
SEC23B
SEC23 homolog B, coat complex II component.
   
 0.836
SAR1A
Secretion associated Ras related GTPase 1A.
   
 0.826
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.