Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABCD4ATP binding cassette subfamily D member 4. (598 aa)    
Predicted Functional Partners:
LMBRD1
LMBR1 domain containing 1.
    
 0.994
ENSCAPP00000010317
annotation not available
    
 0.930
ENSCAPP00000007304
annotation not available
   
 0.917
ABCD1
ATP binding cassette subfamily D member 1.
   
 0.917
ABCB6
ATP binding cassette subfamily B member 6 (Langereis blood group).
  
 
 0.891
MMUT
methylmalonyl-CoA mutase.
   
  
 0.889
ABCD3
ATP binding cassette subfamily D member 3.
     
 0.867
ANKH
ANKH inorganic pyrophosphate transport regulator.
    
   0.855
ABCG5
ATP binding cassette subfamily G member 5.
     
 0.847
ABCB8
ATP binding cassette subfamily B member 8.
   
 0.834
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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