Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LMAN1LLectin, mannose binding 1 like. (452 aa)    
Predicted Functional Partners:
MCFD2
Multiple coagulation factor deficiency 2.
   
 0.921
PREB
Prolactin regulatory element binding.
   
 
 0.702
CANX
Calnexin.
   
 
 0.690
DYNC2LI1
Dynein cytoplasmic 2 light intermediate chain 1.
      
 0.680
ENSCAPP00000001689
annotation not available
   
 0.676
ENSCAPP00000010370
annotation not available
     
 0.671
SEC13
SEC13 homolog, nuclear pore and COPII coat complex component.
   
 
 0.664
SEC24D
SEC24 homolog D, COPII coat complex component.
   
 
 0.655
ENSCAPP00000011033
annotation not available
   
 
 0.655
SEC22A
SEC22 homolog A, vesicle trafficking protein.
   
 
 0.645
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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