Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000001715annotation not available (107 aa)    
Predicted Functional Partners:
SMC5
Structural maintenance of chromosomes 5.
    
   0.580
NSMCE1
NSE1 homolog, SMC5-SMC6 complex component.
    
   0.580
NSMCE2
NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.
    
   0.580
SMC6
Structural maintenance of chromosomes 6.
    
   0.580
MYSM1
Myb like, SWIRM and MPN domains 1.
    
  0.556
TRIM28
Tripartite motif containing 28.
    
 0.556
DDX52
DExD-box helicase 52.
    
   0.521
GART
annotation not available
     
  0.505
SNU13
Small nuclear ribonucleoprotein 13.
    
 0.493
BARD1
BRCA1 associated RING domain 1.
    
 0.484
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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