Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ATRNAttractin. (970 aa)    
Predicted Functional Partners:
MGRN1
Mahogunin ring finger 1.
   
 
 0.995
ANKRD46
Ankyrin repeat domain 46.
    
   0.958
THRA
Thyroid hormone receptor alpha.
   
 
 0.886
RNF157
Ring finger protein 157.
   
 
 0.885
SMO
Smoothened, frizzled class receptor.
     
 0.857
BCS1L
BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone.
      
 0.856
COL3A1
Collagen type III alpha 1 chain.
      
 0.838
TTR
Transthyretin.
      
 0.817
ENSCAPP00000005470
annotation not available
    
 
 0.766
CTSF
Cathepsin F.
      
 0.759
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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