STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATRNAttractin. (970 aa)    
Predicted Functional Partners:
MGRN1
Mahogunin ring finger 1.
   
 
 0.845
TBC1D31
TBC1 domain family member 31.
    
 0.713
PAFAH1B1
Platelet activating factor acetylhydrolase 1b regulatory subunit 1.
    
 0.713
SMO
Smoothened, frizzled class receptor.
     
 0.695
ENSCAPP00000005470
annotation not available
    
 
 0.694
THRA
Thyroid hormone receptor alpha.
      
 0.634
TMEM216
Transmembrane protein 216.
      
 0.634
ENSCAPP00000012305
annotation not available
      
 0.629
AP3D1
Adaptor related protein complex 3 subunit delta 1.
    
 0.627
COL3A1
Collagen type III alpha 1 chain.
      
 0.625
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.