Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NOP9NOP9 nucleolar protein. (460 aa)    
Predicted Functional Partners:
UTP4
UTP4 small subunit processome component.
   
 0.999
HEATR1
HEAT repeat containing 1.
   
 0.998
NOL6
Nucleolar protein 6.
   
 0.998
WDR46
WD repeat domain 46.
   
  0.998
BYSL
Bystin like.
   
 0.998
BMS1
BMS1 ribosome biogenesis factor.
   
  0.997
UTP6
UTP6 small subunit processome component.
   
  0.997
MPHOSPH10
M-phase phosphoprotein 10.
   
  0.996
BOP1
BOP1 ribosomal biogenesis factor.
   
  0.994
RBM19
RNA binding motif protein 19.
   
  0.994
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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