STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NUP160Nucleoporin 160. (1279 aa)    
Predicted Functional Partners:
NUP107
Nucleoporin 107.
   
 0.999
NUP98
Nucleoporin 98.
   
 0.999
SEC13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.999
RANBP2
RAN binding protein 2.
   
 0.999
ENSCAPP00000017022
annotation not available
   
 0.999
AHCTF1
AT-hook containing transcription factor 1.
   
 0.997
SEH1L
SEH1 like nucleoporin.
   
 0.997
NUP37
Nucleoporin 37.
    
 0.997
NUP205
Nucleoporin 205.
   
 0.996
NUP155
Nucleoporin 155.
   
 0.992
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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