GRPEL1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GRPEL1

GrpE like 1, mitochondrial. (218 aa)

Predicted Functional Partners:

TIMM44

0.985

PAM16

0.971

ENSCAPP00000001768

0.961

TIMM50

0.960

CLPB

0.958

ENSCAPP00000008186

0.952

TIMM17A

0.939

ENSCAPP00000008343

0.924

ENSCAPP00000004030

0.920

ENSCAPP00000013399

0.920

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLPB	ENSCAPP00000001768	ENSCAPP00000018443	ENSCAPP00000001768	ClpB homolog, mitochondrial AAA ATPase chaperonin.	annotation not available	0.928
CLPB	GRPEL1	ENSCAPP00000018443	ENSCAPP00000001797	ClpB homolog, mitochondrial AAA ATPase chaperonin.	GrpE like 1, mitochondrial.	0.958
ENSCAPP00000001768	CLPB	ENSCAPP00000001768	ENSCAPP00000018443	annotation not available	ClpB homolog, mitochondrial AAA ATPase chaperonin.	0.928
ENSCAPP00000001768	GRPEL1	ENSCAPP00000001768	ENSCAPP00000001797	annotation not available	GrpE like 1, mitochondrial.	0.961
ENSCAPP00000004030	ENSCAPP00000008186	ENSCAPP00000004030	ENSCAPP00000008186	annotation not available	annotation not available	0.982
ENSCAPP00000004030	ENSCAPP00000008343	ENSCAPP00000004030	ENSCAPP00000008343	annotation not available	annotation not available	0.934
ENSCAPP00000004030	GRPEL1	ENSCAPP00000004030	ENSCAPP00000001797	annotation not available	GrpE like 1, mitochondrial.	0.920
ENSCAPP00000004030	PAM16	ENSCAPP00000004030	ENSCAPP00000013954	annotation not available	Presequence translocase associated motor 16.	0.978
ENSCAPP00000004030	TIMM17A	ENSCAPP00000004030	ENSCAPP00000011069	annotation not available	Translocase of inner mitochondrial membrane 17A.	0.977
ENSCAPP00000004030	TIMM44	ENSCAPP00000004030	ENSCAPP00000013489	annotation not available	Translocase of inner mitochondrial membrane 44.	0.990
ENSCAPP00000004030	TIMM50	ENSCAPP00000004030	ENSCAPP00000017305	annotation not available	Translocase of inner mitochondrial membrane 50.	0.988
ENSCAPP00000008186	ENSCAPP00000004030	ENSCAPP00000008186	ENSCAPP00000004030	annotation not available	annotation not available	0.982
ENSCAPP00000008186	ENSCAPP00000013399	ENSCAPP00000008186	ENSCAPP00000013399	annotation not available	annotation not available	0.982
ENSCAPP00000008186	GRPEL1	ENSCAPP00000008186	ENSCAPP00000001797	annotation not available	GrpE like 1, mitochondrial.	0.952
ENSCAPP00000008186	PAM16	ENSCAPP00000008186	ENSCAPP00000013954	annotation not available	Presequence translocase associated motor 16.	0.976
ENSCAPP00000008186	TIMM17A	ENSCAPP00000008186	ENSCAPP00000011069	annotation not available	Translocase of inner mitochondrial membrane 17A.	0.987
ENSCAPP00000008186	TIMM44	ENSCAPP00000008186	ENSCAPP00000013489	annotation not available	Translocase of inner mitochondrial membrane 44.	0.980
ENSCAPP00000008186	TIMM50	ENSCAPP00000008186	ENSCAPP00000017305	annotation not available	Translocase of inner mitochondrial membrane 50.	0.993
ENSCAPP00000008343	ENSCAPP00000004030	ENSCAPP00000008343	ENSCAPP00000004030	annotation not available	annotation not available	0.934
ENSCAPP00000008343	ENSCAPP00000013399	ENSCAPP00000008343	ENSCAPP00000013399	annotation not available	annotation not available	0.934