STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POGKPogo transposable element derived with KRAB domain. (586 aa)    
Predicted Functional Partners:
UCK2
Uridine-cytidine kinase 2.
    
 
 0.577
MGST3
Microsomal glutathione S-transferase 3.
      
 0.577
ENSCAPP00000013337
annotation not available
      
 0.577
TIGD3
Tigger transposable element derived 3.
      
 0.548
ENSCAPP00000016527
annotation not available
      
 0.547
ERCC6
ERCC excision repair 6, chromatin remodeling factor.
    
  0.501
TRIM28
Tripartite motif containing 28.
    
 
 0.465
ENSCAPP00000003625
annotation not available
    
 
 0.441
ILDR1
Immunoglobulin like domain containing receptor 1.
      
 0.439
ZBED4
Zinc finger BED-type containing 4.
   
  
 0.433
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.