Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBM43RNA binding motif protein 43. (277 aa)    
Predicted Functional Partners:
ENSCAPP00000008014
annotation not available
   
   0.873
IQSEC3
IQ motif and Sec7 domain ArfGEF 3.
      
 0.689
RNF144B
Ring finger protein 144B.
      
 0.675
FAM162A
Family with sequence similarity 162 member A.
   
   0.649
ENSCAPP00000001550
annotation not available
   
 0.545
SLITRK3
SLIT and NTRK like family member 3.
      
 0.459
ATP6V1H
ATPase H+ transporting V1 subunit H.
      
 0.454
TMCO5A
Transmembrane and coiled-coil domains 5A.
      
 0.454
YPEL5
Yippee like 5.
      
 0.454
PJA2
Praja ring finger ubiquitin ligase 2.
      
 0.453
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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