SPATA20 protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

SPATA20

Spermatogenesis associated 20. (789 aa)

Predicted Functional Partners:

ENSCAPP00000017886

0.881

ENSCAPP00000008863

0.838

TYMS

0.798

TK1

0.759

GPD2

0.759

HMBS

0.752

SYT13

0.750

ODF1

0.724

PTN

0.690

SHISA6

0.688

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000008863	SPATA20	ENSCAPP00000008863	ENSCAPP00000001815	annotation not available	Spermatogenesis associated 20.	0.838
ENSCAPP00000008863	TK1	ENSCAPP00000008863	ENSCAPP00000000935	annotation not available	Thymidine kinase 1.	0.658
ENSCAPP00000008863	TYMS	ENSCAPP00000008863	ENSCAPP00000001574	annotation not available	Thymidylate synthetase.	0.755
ENSCAPP00000017886	ODF1	ENSCAPP00000017886	ENSCAPP00000015633	annotation not available	Outer dense fiber of sperm tails 1.	0.571
ENSCAPP00000017886	PTN	ENSCAPP00000017886	ENSCAPP00000006427	annotation not available	Pleiotrophin.	0.578
ENSCAPP00000017886	SHISA6	ENSCAPP00000017886	ENSCAPP00000016408	annotation not available	Shisa family member 6.	0.676
ENSCAPP00000017886	SPATA20	ENSCAPP00000017886	ENSCAPP00000001815	annotation not available	Spermatogenesis associated 20.	0.881
ENSCAPP00000017886	SYT13	ENSCAPP00000017886	ENSCAPP00000015825	annotation not available	Synaptotagmin 13.	0.691
GPD2	SPATA20	ENSCAPP00000015427	ENSCAPP00000001815	Glycerol-3-phosphate dehydrogenase 2.	Spermatogenesis associated 20.	0.759
HMBS	SPATA20	ENSCAPP00000008873	ENSCAPP00000001815	Hydroxymethylbilane synthase.	Spermatogenesis associated 20.	0.752
HMBS	TK1	ENSCAPP00000008873	ENSCAPP00000000935	Hydroxymethylbilane synthase.	Thymidine kinase 1.	0.493
ODF1	ENSCAPP00000017886	ENSCAPP00000015633	ENSCAPP00000017886	Outer dense fiber of sperm tails 1.	annotation not available	0.571
ODF1	PTN	ENSCAPP00000015633	ENSCAPP00000006427	Outer dense fiber of sperm tails 1.	Pleiotrophin.	0.737
ODF1	SHISA6	ENSCAPP00000015633	ENSCAPP00000016408	Outer dense fiber of sperm tails 1.	Shisa family member 6.	0.579
ODF1	SPATA20	ENSCAPP00000015633	ENSCAPP00000001815	Outer dense fiber of sperm tails 1.	Spermatogenesis associated 20.	0.724
ODF1	SYT13	ENSCAPP00000015633	ENSCAPP00000015825	Outer dense fiber of sperm tails 1.	Synaptotagmin 13.	0.755
PTN	ENSCAPP00000017886	ENSCAPP00000006427	ENSCAPP00000017886	Pleiotrophin.	annotation not available	0.578
PTN	ODF1	ENSCAPP00000006427	ENSCAPP00000015633	Pleiotrophin.	Outer dense fiber of sperm tails 1.	0.737
PTN	SHISA6	ENSCAPP00000006427	ENSCAPP00000016408	Pleiotrophin.	Shisa family member 6.	0.453
PTN	SPATA20	ENSCAPP00000006427	ENSCAPP00000001815	Pleiotrophin.	Spermatogenesis associated 20.	0.690