STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPATA20Spermatogenesis associated 20. (789 aa)    
Predicted Functional Partners:
TYMS
Thymidylate synthetase.
    
  0.835
HMBS
Hydroxymethylbilane synthase.
    
  0.804
AGXT2
Alanine--glyoxylate aminotransferase 2.
    
  0.705
PHYKPL
5-phosphohydroxy-L-lysine phospho-lyase.
    
  0.705
ABAT
4-aminobutyrate aminotransferase.
    
  0.705
ETNPPL
Ethanolamine-phosphate phospho-lyase.
    
  0.705
RIMKLB
Ribosomal modification protein rimK like family member B.
    
  0.639
RIMKLA
Ribosomal modification protein rimK like family member A.
    
  0.639
GGT6
Gamma-glutamyltransferase 6.
    
  0.561
GGT7
Gamma-glutamyltransferase 7.
    
  0.561
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.