Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM35Tripartite motif containing 35. (348 aa)    
Predicted Functional Partners:
TRIM32
Tripartite motif containing 32.
    
 0.906
TRIM10
Tripartite motif containing 10.
    
 
 0.903
ENSCAPP00000017114
annotation not available
    
   0.833
TRIM44
Tripartite motif containing 44.
    
 0.706
ICOS
Inducible T cell costimulator.
   
 0.670
TRIM23
Tripartite motif containing 23.
    
 0.653
ENSCAPP00000008952
annotation not available
   
 0.651
TRIM29
Tripartite motif containing 29.
  
 
 
 0.644
DDX58
DExD/H-box helicase 58.
    
 0.638
SQSTM1
Sequestosome 1.
    
 0.610
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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