Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDK1Sidekick cell adhesion molecule 1. (1970 aa)    
Predicted Functional Partners:
CORO2B
Coronin 2B.
   
  
 0.750
ZSCAN25
Zinc finger and SCAN domain containing 25.
    
 
 0.691
UTP20
UTP20 small subunit processome component.
    
  0.689
RRP7A
Ribosomal RNA processing 7 homolog A.
     
  0.686
MPHOSPH10
M-phase phosphoprotein 10.
     
  0.686
BOP1
BOP1 ribosomal biogenesis factor.
     
  0.686
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
     
  0.686
NOP14
NOP14 nucleolar protein.
     
  0.686
BMS1
BMS1 ribosome biogenesis factor.
     
  0.686
KRI1
KRI1 homolog.
     
  0.686
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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