Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PPM1MProtein phosphatase, Mg2+/Mn2+ dependent 1M. (393 aa)    
Predicted Functional Partners:
PTPRU
Protein tyrosine phosphatase receptor type U.
      
 0.747
ENSCAPP00000014965
annotation not available
      
 0.678
MTMR9
Myotubularin related protein 9.
      
 0.673
RAB29
RAB29, member RAS oncogene family.
    
 
 0.621
NT5DC2
5'-nucleotidase domain containing 2.
      
 0.567
PNKP
Polynucleotide kinase 3'-phosphatase.
      
 0.535
RAB35
RAB35, member RAS oncogene family.
    
 
 0.508
RAB8A
RAB8A, member RAS oncogene family.
    
 
 0.491
RAB8B
RAB8B, member RAS oncogene family.
    
 
 0.491
ACBD3
acyl-CoA binding domain containing 3.
    
 
 0.478
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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