Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ROM1Retinal outer segment membrane protein 1. (351 aa)    
Predicted Functional Partners:
RHO
Rhodopsin.
   
  
 0.797
CRYBA1
Crystallin beta A1.
   
  
 0.768
AIPL1
Aryl hydrocarbon receptor interacting protein like 1.
   
  
 0.728
GRK1
G protein-coupled receptor kinase 1.
      
 0.667
CRX
Cone-rod homeobox.
      
 0.666
PDE6A
Phosphodiesterase 6A.
   
  
 0.653
RCVRN
Recoverin.
   
  
 0.639
OPN1SW
Opsin 1, short wave sensitive.
   
  
 0.634
ENSCAPP00000017722
annotation not available
   
  
 0.630
ENSCAPP00000018676
annotation not available
   
  
 0.628
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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