STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROM1Retinal outer segment membrane protein 1. (351 aa)    
Predicted Functional Partners:
PRPH2
Peripherin 2.
  
 
0.939
MET
MET proto-oncogene, receptor tyrosine kinase.
    
  0.611
MST1R
Macrophage stimulating 1 receptor.
    
  0.611
GRK1
G protein-coupled receptor kinase 1.
   
  
 0.545
PDE6C
Phosphodiesterase 6C.
   
  
 0.543
CCDC25
Coiled-coil domain containing 25.
      
 0.532
RHO
Rhodopsin.
   
  
 0.500
PDGFB
Platelet derived growth factor subunit B.
    
 0.487
TMX3
Thioredoxin related transmembrane protein 3.
   
 
  0.454
CRYBA1
Crystallin beta A1.
   
  
 0.446
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.