ENSCAPP00000001901 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000001901

annotation not available (132 aa)

Predicted Functional Partners:

BMP4

0.784

GATA3

0.715

TBX10

0.633

SNAI1

0.594

FOXH1

0.581

ENSCAPP00000010002

0.572

ENSCAPP00000008896

0.571

POU5F2

0.557

TBX6

0.546

ENSCAPP00000011556

0.520

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMP4	ENSCAPP00000001901	ENSCAPP00000009656	ENSCAPP00000001901	Bone morphogenetic protein 4.	annotation not available	0.784
ENSCAPP00000001901	BMP4	ENSCAPP00000001901	ENSCAPP00000009656	annotation not available	Bone morphogenetic protein 4.	0.784
ENSCAPP00000001901	ENSCAPP00000008896	ENSCAPP00000001901	ENSCAPP00000008896	annotation not available	annotation not available	0.571
ENSCAPP00000001901	ENSCAPP00000010002	ENSCAPP00000001901	ENSCAPP00000010002	annotation not available	annotation not available	0.572
ENSCAPP00000001901	ENSCAPP00000011556	ENSCAPP00000001901	ENSCAPP00000011556	annotation not available	annotation not available	0.520
ENSCAPP00000001901	FOXH1	ENSCAPP00000001901	ENSCAPP00000016457	annotation not available	Forkhead box H1.	0.581
ENSCAPP00000001901	GATA3	ENSCAPP00000001901	ENSCAPP00000002419	annotation not available	GATA binding protein 3.	0.715
ENSCAPP00000001901	POU5F2	ENSCAPP00000001901	ENSCAPP00000004974	annotation not available	POU domain class 5, transcription factor 2.	0.557
ENSCAPP00000001901	SNAI1	ENSCAPP00000001901	ENSCAPP00000013357	annotation not available	Snail family transcriptional repressor 1.	0.594
ENSCAPP00000001901	TBX10	ENSCAPP00000001901	ENSCAPP00000011190	annotation not available	T-box transcription factor 10.	0.633
ENSCAPP00000001901	TBX6	ENSCAPP00000001901	ENSCAPP00000018026	annotation not available	T-box transcription factor 6.	0.546
ENSCAPP00000008896	ENSCAPP00000001901	ENSCAPP00000008896	ENSCAPP00000001901	annotation not available	annotation not available	0.571
ENSCAPP00000010002	ENSCAPP00000001901	ENSCAPP00000010002	ENSCAPP00000001901	annotation not available	annotation not available	0.572
ENSCAPP00000010002	FOXH1	ENSCAPP00000010002	ENSCAPP00000016457	annotation not available	Forkhead box H1.	0.566
ENSCAPP00000010002	TBX10	ENSCAPP00000010002	ENSCAPP00000011190	annotation not available	T-box transcription factor 10.	0.447
ENSCAPP00000011556	ENSCAPP00000001901	ENSCAPP00000011556	ENSCAPP00000001901	annotation not available	annotation not available	0.520
ENSCAPP00000011556	TBX10	ENSCAPP00000011556	ENSCAPP00000011190	annotation not available	T-box transcription factor 10.	0.524
ENSCAPP00000011556	TBX6	ENSCAPP00000011556	ENSCAPP00000018026	annotation not available	T-box transcription factor 6.	0.520
FOXH1	ENSCAPP00000001901	ENSCAPP00000016457	ENSCAPP00000001901	Forkhead box H1.	annotation not available	0.581
FOXH1	ENSCAPP00000010002	ENSCAPP00000016457	ENSCAPP00000010002	Forkhead box H1.	annotation not available	0.566