TRIM62 protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

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[Homology]

Score

TRIM62

Tripartite motif containing 62. (403 aa)

Predicted Functional Partners:

CARD9

0.981

TRIM44

0.801

TRIM32

0.739

TRIM66

0.691

ENSCAPP00000015440

0.680

EMP3

0.678

ENSCAPP00000000972

0.658

ENSCAPP00000004313

0.658

ENSCAPP00000008606

0.658

UBE2D2

0.658

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CARD9	TRIM62	ENSCAPP00000016637	ENSCAPP00000001906	Caspase recruitment domain family member 9.	Tripartite motif containing 62.	0.981
EMP3	TRIM62	ENSCAPP00000010173	ENSCAPP00000001906	Epithelial membrane protein 3.	Tripartite motif containing 62.	0.678
ENSCAPP00000000972	ENSCAPP00000004313	ENSCAPP00000000972	ENSCAPP00000004313	annotation not available	annotation not available	0.817
ENSCAPP00000000972	ENSCAPP00000015440	ENSCAPP00000000972	ENSCAPP00000015440	annotation not available	annotation not available	0.424
ENSCAPP00000000972	TRIM32	ENSCAPP00000000972	ENSCAPP00000005214	annotation not available	Tripartite motif containing 32.	0.922
ENSCAPP00000000972	TRIM62	ENSCAPP00000000972	ENSCAPP00000001906	annotation not available	Tripartite motif containing 62.	0.658
ENSCAPP00000000972	UBE2D2	ENSCAPP00000000972	ENSCAPP00000009522	annotation not available	Ubiquitin conjugating enzyme E2 D2.	0.817
ENSCAPP00000004313	ENSCAPP00000000972	ENSCAPP00000004313	ENSCAPP00000000972	annotation not available	annotation not available	0.817
ENSCAPP00000004313	ENSCAPP00000008606	ENSCAPP00000004313	ENSCAPP00000008606	annotation not available	annotation not available	0.817
ENSCAPP00000004313	ENSCAPP00000015440	ENSCAPP00000004313	ENSCAPP00000015440	annotation not available	annotation not available	0.424
ENSCAPP00000004313	TRIM32	ENSCAPP00000004313	ENSCAPP00000005214	annotation not available	Tripartite motif containing 32.	0.669
ENSCAPP00000004313	TRIM62	ENSCAPP00000004313	ENSCAPP00000001906	annotation not available	Tripartite motif containing 62.	0.658
ENSCAPP00000008606	ENSCAPP00000004313	ENSCAPP00000008606	ENSCAPP00000004313	annotation not available	annotation not available	0.817
ENSCAPP00000008606	ENSCAPP00000015440	ENSCAPP00000008606	ENSCAPP00000015440	annotation not available	annotation not available	0.424
ENSCAPP00000008606	TRIM32	ENSCAPP00000008606	ENSCAPP00000005214	annotation not available	Tripartite motif containing 32.	0.922
ENSCAPP00000008606	TRIM62	ENSCAPP00000008606	ENSCAPP00000001906	annotation not available	Tripartite motif containing 62.	0.658
ENSCAPP00000008606	UBE2D2	ENSCAPP00000008606	ENSCAPP00000009522	annotation not available	Ubiquitin conjugating enzyme E2 D2.	0.817
ENSCAPP00000015440	ENSCAPP00000000972	ENSCAPP00000015440	ENSCAPP00000000972	annotation not available	annotation not available	0.424
ENSCAPP00000015440	ENSCAPP00000004313	ENSCAPP00000015440	ENSCAPP00000004313	annotation not available	annotation not available	0.424
ENSCAPP00000015440	ENSCAPP00000008606	ENSCAPP00000015440	ENSCAPP00000008606	annotation not available	annotation not available	0.424