ENSCAPP00000001916 protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ENSCAPP00000001916

annotation not available (85 aa)

Predicted Functional Partners:

RPP30

0.998

POP1

0.998

POP4

0.998

POP5

0.998

RPP25L

0.997

KRI1

0.964

ENSCAPP00000004525

0.963

NEPRO

0.954

RPP40

0.951

ENSCAPP00000015731

0.950

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000001916	ENSCAPP00000004525	ENSCAPP00000001916	ENSCAPP00000004525	annotation not available	annotation not available	0.963
ENSCAPP00000001916	ENSCAPP00000015731	ENSCAPP00000001916	ENSCAPP00000015731	annotation not available	annotation not available	0.950
ENSCAPP00000001916	KRI1	ENSCAPP00000001916	ENSCAPP00000009385	annotation not available	KRI1 homolog.	0.964
ENSCAPP00000001916	NEPRO	ENSCAPP00000001916	ENSCAPP00000004794	annotation not available	Nucleolus and neural progenitor protein.	0.954
ENSCAPP00000001916	POP1	ENSCAPP00000001916	ENSCAPP00000004787	annotation not available	POP1 homolog, ribonuclease P/MRP subunit.	0.998
ENSCAPP00000001916	POP4	ENSCAPP00000001916	ENSCAPP00000009682	annotation not available	POP4 homolog, ribonuclease P/MRP subunit.	0.998
ENSCAPP00000001916	POP5	ENSCAPP00000001916	ENSCAPP00000017140	annotation not available	POP5 homolog, ribonuclease P/MRP subunit.	0.998
ENSCAPP00000001916	RPP25L	ENSCAPP00000001916	ENSCAPP00000004344	annotation not available	Ribonuclease P/MRP subunit p25 like.	0.997
ENSCAPP00000001916	RPP30	ENSCAPP00000001916	ENSCAPP00000000909	annotation not available	Ribonuclease P/MRP subunit p30.	0.998
ENSCAPP00000001916	RPP40	ENSCAPP00000001916	ENSCAPP00000002251	annotation not available	Ribonuclease P/MRP subunit p40.	0.951
ENSCAPP00000004525	ENSCAPP00000001916	ENSCAPP00000004525	ENSCAPP00000001916	annotation not available	annotation not available	0.963
ENSCAPP00000004525	ENSCAPP00000015731	ENSCAPP00000004525	ENSCAPP00000015731	annotation not available	annotation not available	0.722
ENSCAPP00000004525	NEPRO	ENSCAPP00000004525	ENSCAPP00000004794	annotation not available	Nucleolus and neural progenitor protein.	0.994
ENSCAPP00000004525	POP1	ENSCAPP00000004525	ENSCAPP00000004787	annotation not available	POP1 homolog, ribonuclease P/MRP subunit.	0.972
ENSCAPP00000004525	POP4	ENSCAPP00000004525	ENSCAPP00000009682	annotation not available	POP4 homolog, ribonuclease P/MRP subunit.	0.995
ENSCAPP00000004525	POP5	ENSCAPP00000004525	ENSCAPP00000017140	annotation not available	POP5 homolog, ribonuclease P/MRP subunit.	0.994
ENSCAPP00000004525	RPP25L	ENSCAPP00000004525	ENSCAPP00000004344	annotation not available	Ribonuclease P/MRP subunit p25 like.	0.994
ENSCAPP00000004525	RPP30	ENSCAPP00000004525	ENSCAPP00000000909	annotation not available	Ribonuclease P/MRP subunit p30.	0.991
ENSCAPP00000004525	RPP40	ENSCAPP00000004525	ENSCAPP00000002251	annotation not available	Ribonuclease P/MRP subunit p40.	0.852
ENSCAPP00000015731	ENSCAPP00000001916	ENSCAPP00000015731	ENSCAPP00000001916	annotation not available	annotation not available	0.950