AMN1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMN1

Antagonist of mitotic exit network 1 homolog. (261 aa)

Predicted Functional Partners:

SKP1

0.791

CUL1

0.706

CUL3

0.706

CACUL1

0.706

RBX1

0.692

ENSCAPP00000005342

0.652

CRY2

0.641

CRY1

0.641

ENSCAPP00000009519

0.635

ELOC

0.620

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMN1	CACUL1	ENSCAPP00000001924	ENSCAPP00000016905	Antagonist of mitotic exit network 1 homolog.	CDK2 associated cullin domain 1.	0.706
AMN1	CRY1	ENSCAPP00000001924	ENSCAPP00000014244	Antagonist of mitotic exit network 1 homolog.	Cryptochrome circadian regulator 1.	0.641
AMN1	CRY2	ENSCAPP00000001924	ENSCAPP00000010868	Antagonist of mitotic exit network 1 homolog.	Cryptochrome circadian regulator 2.	0.641
AMN1	CUL1	ENSCAPP00000001924	ENSCAPP00000006453	Antagonist of mitotic exit network 1 homolog.	Cullin 1.	0.706
AMN1	CUL3	ENSCAPP00000001924	ENSCAPP00000016657	Antagonist of mitotic exit network 1 homolog.	Cullin 3.	0.706
AMN1	ELOC	ENSCAPP00000001924	ENSCAPP00000003711	Antagonist of mitotic exit network 1 homolog.	Elongin C.	0.620
AMN1	ENSCAPP00000005342	ENSCAPP00000001924	ENSCAPP00000005342	Antagonist of mitotic exit network 1 homolog.	annotation not available	0.652
AMN1	ENSCAPP00000009519	ENSCAPP00000001924	ENSCAPP00000009519	Antagonist of mitotic exit network 1 homolog.	annotation not available	0.635
AMN1	RBX1	ENSCAPP00000001924	ENSCAPP00000006025	Antagonist of mitotic exit network 1 homolog.	Ring-box 1.	0.692
AMN1	SKP1	ENSCAPP00000001924	ENSCAPP00000009508	Antagonist of mitotic exit network 1 homolog.	S-phase kinase associated protein 1.	0.791
CACUL1	AMN1	ENSCAPP00000016905	ENSCAPP00000001924	CDK2 associated cullin domain 1.	Antagonist of mitotic exit network 1 homolog.	0.706
CACUL1	ELOC	ENSCAPP00000016905	ENSCAPP00000003711	CDK2 associated cullin domain 1.	Elongin C.	0.731
CACUL1	ENSCAPP00000005342	ENSCAPP00000016905	ENSCAPP00000005342	CDK2 associated cullin domain 1.	annotation not available	0.912
CACUL1	ENSCAPP00000009519	ENSCAPP00000016905	ENSCAPP00000009519	CDK2 associated cullin domain 1.	annotation not available	0.948
CACUL1	RBX1	ENSCAPP00000016905	ENSCAPP00000006025	CDK2 associated cullin domain 1.	Ring-box 1.	0.912
CACUL1	SKP1	ENSCAPP00000016905	ENSCAPP00000009508	CDK2 associated cullin domain 1.	S-phase kinase associated protein 1.	0.957
CRY1	AMN1	ENSCAPP00000014244	ENSCAPP00000001924	Cryptochrome circadian regulator 1.	Antagonist of mitotic exit network 1 homolog.	0.641
CRY1	CRY2	ENSCAPP00000014244	ENSCAPP00000010868	Cryptochrome circadian regulator 1.	Cryptochrome circadian regulator 2.	0.988
CRY1	CUL1	ENSCAPP00000014244	ENSCAPP00000006453	Cryptochrome circadian regulator 1.	Cullin 1.	0.465
CRY1	SKP1	ENSCAPP00000014244	ENSCAPP00000009508	Cryptochrome circadian regulator 1.	S-phase kinase associated protein 1.	0.619