STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFR3BEFR3 homolog B. (787 aa)    
Predicted Functional Partners:
PI4KA
Phosphatidylinositol 4-kinase alpha.
   
 
 0.934
TTC7B
Tetratricopeptide repeat domain 7B.
   
 
 0.908
TTC7A
Tetratricopeptide repeat domain 7A.
   
 
 0.854
ENSCAPP00000001303
annotation not available
      
 0.682
COG5
Component of oligomeric golgi complex 5.
   
  
 0.455
FAM126A
Family with sequence similarity 126 member A.
      
 0.438
STX5
Syntaxin 5.
      
 0.438
LINGO2
Leucine rich repeat and Ig domain containing 2.
      
 0.438
SPEF1
Sperm flagellar 1.
      
 0.438
PI4KB
Phosphatidylinositol 4-kinase beta.
      
 0.438
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.