Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TUBTUB bipartite transcription factor. (496 aa)    
Predicted Functional Partners:
IFT140
Intraflagellar transport 140.
    
 0.951
ENSCAPP00000004835
annotation not available
      
 0.949
TTC21B
Tetratricopeptide repeat domain 21B.
    
 0.935
IFT122
Intraflagellar transport 122.
    
 0.930
WDR19
WD repeat domain 19.
    
 0.922
WDR35
WD repeat domain 35.
    
 0.898
IFT43
Intraflagellar transport 43.
    
 
 0.850
ANKRD54
Ankyrin repeat domain 54.
    
   0.816
C8orf37
Chromosome 8 open reading frame 37.
      
 0.816
SIRT1
Sirtuin 1.
    
   0.794
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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