STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TUBTUB bipartite transcription factor. (496 aa)    
Predicted Functional Partners:
IFT122
Intraflagellar transport 122.
    
 0.837
IFT140
Intraflagellar transport 140.
    
 0.835
WDR19
WD repeat domain 19.
    
 0.830
TTC21B
Tetratricopeptide repeat domain 21B.
    
 0.819
WDR35
WD repeat domain 35.
    
 0.800
TTC21A
Tetratricopeptide repeat domain 21A.
    
 0.727
GPR161
G protein-coupled receptor 161.
     
 0.667
ENSCAPP00000013070
annotation not available
    
 
 0.590
ENSCAPP00000004835
annotation not available
      
 0.570
IFT43
Intraflagellar transport 43.
    
 
 0.568
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.