STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMBLCarboxymethylenebutenolidase homolog. (245 aa)    
Predicted Functional Partners:
TRAPPC13
Trafficking protein particle complex 13.
    
   0.858
TRAPPC1
Trafficking protein particle complex 1.
    
   0.858
ENSCAPP00000017935
annotation not available
    
   0.858
TRAPPC12
Trafficking protein particle complex 12.
    
   0.853
TRAPPC11
Trafficking protein particle complex 11.
    
   0.853
ENSCAPP00000015411
annotation not available
  
 
 0.846
TRAPPC2L
Trafficking protein particle complex 2 like.
    
   0.839
JOSD1
Josephin domain containing 1.
      
 0.830
SLC16A14
Solute carrier family 16 member 14.
   
  
 0.816
ROPN1L
Rhophilin associated tail protein 1 like.
      
 0.757
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.