Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000001967annotation not available (320 aa)    
Predicted Functional Partners:
SON
SON DNA binding protein.
   
  0.925
RBBP6
RB binding protein 6, ubiquitin ligase.
   
 
 0.725
HDAC3
Histone deacetylase 3.
   
 0.656
MYSM1
Myb like, SWIRM and MPN domains 1.
   
 0.648
TRIM26
Tripartite motif containing 26.
    
 0.641
STAG1
Stromal antigen 1.
    
 
 0.612
ENSCAPP00000017472
annotation not available
    
 0.604
SLC35F5
Solute carrier family 35 member F5.
    
 
 0.601
COL5A3
Collagen type V alpha 3 chain.
    
 0.592
BCL3
BCL3 transcription coactivator.
  
 
  0.575
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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