Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KDM1ALysine demethylase 1A. (588 aa)    
Predicted Functional Partners:
RCOR1
REST corepressor 1.
    
 0.999
PHF21A
PHD finger protein 21A.
    
 0.998
ZMYM2
Zinc finger MYM-type containing 2.
    
 0.998
HMG20B
High mobility group 20B.
    
 0.998
HDAC1
Histone deacetylase 1.
   
 0.994
HDAC2
Histone deacetylase 2.
   
 0.994
RCOR2
REST corepressor 2.
    
 0.993
ZNF516
Zinc finger protein 516.
    
 0.992
RCOR3
REST corepressor 3.
    
 0.992
ZMYM3
Zinc finger MYM-type containing 3.
    
 0.992
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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