STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KDM1ALysine demethylase 1A. (588 aa)    
Predicted Functional Partners:
RCOR1
REST corepressor 1.
    
 0.999
PHF21A
PHD finger protein 21A.
    
 0.991
GLYR1
Glyoxylate reductase 1 homolog.
    
 
 0.989
HDAC1
Histone deacetylase 1.
   
 0.984
RCOR3
REST corepressor 3.
    
 0.982
HDAC2
Histone deacetylase 2.
   
 0.982
ENSCAPP00000000270
annotation not available
     
 0.979
ENSCAPP00000006586
annotation not available
     
 0.979
ENSCAPP00000013350
annotation not available
     
 0.979
HMG20B
High mobility group 20B.
   
 0.973
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.