STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRH2peptidyl-tRNA hydrolase 2. (179 aa)    
Predicted Functional Partners:
GATB
glutamyl-tRNA amidotransferase subunit B.
    
  0.804
TMEM109
Transmembrane protein 109.
    
  0.804
USP30
Ubiquitin specific peptidase 30.
    
  0.667
ENSCAPP00000011409
annotation not available
   
 
 0.619
FKBP8
FKBP prolyl isomerase 8.
    
  0.612
TOMM70
Translocase of outer mitochondrial membrane 70.
     
 0.589
NUP155
Nucleoporin 155.
    
  0.580
PTRH1
peptidyl-tRNA hydrolase 1 homolog.
      
 0.566
ERBIN
Erbb2 interacting protein.
      
 0.563
BPTF
Bromodomain PHD finger transcription factor.
      
 0.561
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.