Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTRH2peptidyl-tRNA hydrolase 2. (179 aa)    
Predicted Functional Partners:
ERBIN
Erbb2 interacting protein.
      
 0.886
ATP6V0A2
ATPase H+ transporting V0 subunit a2.
    
   0.879
ENSCAPP00000003131
annotation not available
     
 0.873
ENSCAPP00000000685
annotation not available
   
 
 0.764
GATB
glutamyl-tRNA amidotransferase subunit B.
    
  0.760
TMEM109
Transmembrane protein 109.
    
  0.760
BPTF
Bromodomain PHD finger transcription factor.
      
 0.743
ENSCAPP00000012999
annotation not available
   
 
 0.733
QRSL1
glutaminyl-tRNA amidotransferase subunit QRSL1.
     
  0.694
FAAH
Fatty acid amide hydrolase.
     
  0.694
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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