STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPP4R1Protein phosphatase 4 regulatory subunit 1. (930 aa)    
Predicted Functional Partners:
PPP4C
Protein phosphatase 4 catalytic subunit.
    
 0.997
CCDC6
Coiled-coil domain containing 6.
    
 
 0.973
C1S
Complement C1s.
    
   0.959
PPP2CB
Protein phosphatase 2 catalytic subunit beta.
   
 0.916
PPP2CA
Protein phosphatase 2 catalytic subunit alpha.
   
 0.916
PPP4R3A
Protein phosphatase 4 regulatory subunit 3A.
     
 0.915
ENSCAPP00000008331
annotation not available
     
 0.885
ENSCAPP00000004272
annotation not available
    
 0.881
FBXO42
F-box protein 42.
   
 0.850
NDEL1
nudE neurodevelopment protein 1 like 1.
   
 
 0.819
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.