ENSCAPP00000001977 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000001977

annotation not available (449 aa)

Predicted Functional Partners:

ENSCAPP00000000576

0.808

ENSCAPP00000004781

0.808

SF3B1

0.746

BOP1

0.722

RBM8A

0.720

ENSCAPP00000000451

0.719

SF3B3

0.714

PRPF6

0.714

LSM1

0.707

ENSCAPP00000010582

0.707

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOP1	ENSCAPP00000001977	ENSCAPP00000002700	ENSCAPP00000001977	BOP1 ribosomal biogenesis factor.	annotation not available	0.722
BOP1	ENSCAPP00000010582	ENSCAPP00000002700	ENSCAPP00000010582	BOP1 ribosomal biogenesis factor.	annotation not available	0.999
ENSCAPP00000000451	ENSCAPP00000001977	ENSCAPP00000000451	ENSCAPP00000001977	annotation not available	annotation not available	0.719
ENSCAPP00000000451	LSM1	ENSCAPP00000000451	ENSCAPP00000000258	annotation not available	LSM1 homolog, mRNA degradation associated.	0.890
ENSCAPP00000000576	ENSCAPP00000001977	ENSCAPP00000000576	ENSCAPP00000001977	annotation not available	annotation not available	0.808
ENSCAPP00000000576	ENSCAPP00000004781	ENSCAPP00000000576	ENSCAPP00000004781	annotation not available	annotation not available	0.999
ENSCAPP00000001977	BOP1	ENSCAPP00000001977	ENSCAPP00000002700	annotation not available	BOP1 ribosomal biogenesis factor.	0.722
ENSCAPP00000001977	ENSCAPP00000000451	ENSCAPP00000001977	ENSCAPP00000000451	annotation not available	annotation not available	0.719
ENSCAPP00000001977	ENSCAPP00000000576	ENSCAPP00000001977	ENSCAPP00000000576	annotation not available	annotation not available	0.808
ENSCAPP00000001977	ENSCAPP00000004781	ENSCAPP00000001977	ENSCAPP00000004781	annotation not available	annotation not available	0.808
ENSCAPP00000001977	ENSCAPP00000010582	ENSCAPP00000001977	ENSCAPP00000010582	annotation not available	annotation not available	0.707
ENSCAPP00000001977	LSM1	ENSCAPP00000001977	ENSCAPP00000000258	annotation not available	LSM1 homolog, mRNA degradation associated.	0.707
ENSCAPP00000001977	PRPF6	ENSCAPP00000001977	ENSCAPP00000014812	annotation not available	pre-mRNA processing factor 6.	0.714
ENSCAPP00000001977	RBM8A	ENSCAPP00000001977	ENSCAPP00000013465	annotation not available	RNA binding motif protein 8A.	0.720
ENSCAPP00000001977	SF3B1	ENSCAPP00000001977	ENSCAPP00000003928	annotation not available	Splicing factor 3b subunit 1.	0.746
ENSCAPP00000001977	SF3B3	ENSCAPP00000001977	ENSCAPP00000000983	annotation not available	Splicing factor 3b subunit 3.	0.714
ENSCAPP00000004781	ENSCAPP00000000576	ENSCAPP00000004781	ENSCAPP00000000576	annotation not available	annotation not available	0.999
ENSCAPP00000004781	ENSCAPP00000001977	ENSCAPP00000004781	ENSCAPP00000001977	annotation not available	annotation not available	0.808
ENSCAPP00000010582	BOP1	ENSCAPP00000010582	ENSCAPP00000002700	annotation not available	BOP1 ribosomal biogenesis factor.	0.999
ENSCAPP00000010582	ENSCAPP00000001977	ENSCAPP00000010582	ENSCAPP00000001977	annotation not available	annotation not available	0.707