STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MTTPMicrosomal triglyceride transfer protein. (756 aa)    
Predicted Functional Partners:
APOB
Apolipoprotein B.
   
 0.999
P4HB
Prolyl 4-hydroxylase subunit beta.
    
 0.993
PDIA2
Protein disulfide isomerase family A member 2.
    
 0.919
PRKDC
Protein kinase, DNA-activated, catalytic subunit.
    
   0.839
ENSCAPP00000015384
annotation not available
   
 
 0.783
PDIA4
Protein disulfide isomerase family A member 4.
    
 0.706
PDIA3
Protein disulfide isomerase family A member 3.
    
 0.703
LDLR
Low density lipoprotein receptor.
    
 
 0.696
PRKD1
Protein kinase D1.
    
 
 0.691
RAD51
RAD51 recombinase.
    
  0.633
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.