STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XRCC6X-ray repair cross complementing 6. (584 aa)    
Predicted Functional Partners:
PRKDC
Protein kinase, DNA-activated, catalytic subunit.
   
 0.999
LIG4
DNA ligase 4.
   
 0.998
ENSCAPP00000008386
annotation not available
    
 0.997
ATM
ATM serine/threonine kinase.
    
 0.996
ENSCAPP00000013410
annotation not available
    
 0.995
ENSCAPP00000001780
annotation not available
    
 0.991
LIG3
DNA ligase 3.
   
 0.987
ENSCAPP00000009980
annotation not available
    
 0.986
ENSCAPP00000014899
annotation not available
   
 0.985
WRN
WRN RecQ like helicase.
    
 
 0.984
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.