ENSCAPP00000002016 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000002016

annotation not available (910 aa)

Predicted Functional Partners:

ENSCAPP00000003757

0.992

ENSCAPP00000009156

0.974

ENSCAPP00000015438

0.957

ENSCAPP00000015628

0.954

KPNA4

0.951

KPNA3

0.941

XPOT

0.938

XPO4

0.936

ENSCAPP00000018284

0.933

KPNA2

0.929

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000002016	ENSCAPP00000003757	ENSCAPP00000002016	ENSCAPP00000003757	annotation not available	annotation not available	0.992
ENSCAPP00000002016	ENSCAPP00000009156	ENSCAPP00000002016	ENSCAPP00000009156	annotation not available	annotation not available	0.974
ENSCAPP00000002016	ENSCAPP00000015438	ENSCAPP00000002016	ENSCAPP00000015438	annotation not available	annotation not available	0.957
ENSCAPP00000002016	ENSCAPP00000015628	ENSCAPP00000002016	ENSCAPP00000015628	annotation not available	annotation not available	0.954
ENSCAPP00000002016	ENSCAPP00000018284	ENSCAPP00000002016	ENSCAPP00000018284	annotation not available	annotation not available	0.933
ENSCAPP00000002016	KPNA2	ENSCAPP00000002016	ENSCAPP00000004009	annotation not available	Karyopherin subunit alpha 2.	0.929
ENSCAPP00000002016	KPNA3	ENSCAPP00000002016	ENSCAPP00000001006	annotation not available	Karyopherin subunit alpha 3.	0.941
ENSCAPP00000002016	KPNA4	ENSCAPP00000002016	ENSCAPP00000018294	annotation not available	Karyopherin subunit alpha 4.	0.951
ENSCAPP00000002016	XPO4	ENSCAPP00000002016	ENSCAPP00000009917	annotation not available	Exportin 4.	0.936
ENSCAPP00000002016	XPOT	ENSCAPP00000002016	ENSCAPP00000001060	annotation not available	Exportin for tRNA.	0.938
ENSCAPP00000003757	ENSCAPP00000002016	ENSCAPP00000003757	ENSCAPP00000002016	annotation not available	annotation not available	0.992
ENSCAPP00000003757	ENSCAPP00000009156	ENSCAPP00000003757	ENSCAPP00000009156	annotation not available	annotation not available	0.785
ENSCAPP00000003757	ENSCAPP00000015438	ENSCAPP00000003757	ENSCAPP00000015438	annotation not available	annotation not available	0.948
ENSCAPP00000003757	ENSCAPP00000015628	ENSCAPP00000003757	ENSCAPP00000015628	annotation not available	annotation not available	0.970
ENSCAPP00000003757	ENSCAPP00000018284	ENSCAPP00000003757	ENSCAPP00000018284	annotation not available	annotation not available	0.640
ENSCAPP00000003757	KPNA2	ENSCAPP00000003757	ENSCAPP00000004009	annotation not available	Karyopherin subunit alpha 2.	0.729
ENSCAPP00000003757	KPNA3	ENSCAPP00000003757	ENSCAPP00000001006	annotation not available	Karyopherin subunit alpha 3.	0.795
ENSCAPP00000003757	KPNA4	ENSCAPP00000003757	ENSCAPP00000018294	annotation not available	Karyopherin subunit alpha 4.	0.724
ENSCAPP00000003757	XPO4	ENSCAPP00000003757	ENSCAPP00000009917	annotation not available	Exportin 4.	0.972
ENSCAPP00000003757	XPOT	ENSCAPP00000003757	ENSCAPP00000001060	annotation not available	Exportin for tRNA.	0.974