LMO4 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LMO4

LIM domain only 4. (230 aa)

Predicted Functional Partners:

LDB1

0.883

LDB2

0.791

SSBP2

0.764

SRF

0.615

ENSCAPP00000012173

0.612

ENSCAPP00000009473

0.580

ENSCAPP00000016206

0.551

TCF3

0.542

ENSCAPP00000011786

0.542

TCF4

0.542

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000009473	LMO4	ENSCAPP00000009473	ENSCAPP00000002028	annotation not available	LIM domain only 4.	0.580
ENSCAPP00000011786	LDB1	ENSCAPP00000011786	ENSCAPP00000007918	annotation not available	LIM domain binding 1.	0.914
ENSCAPP00000011786	LDB2	ENSCAPP00000011786	ENSCAPP00000007810	annotation not available	LIM domain binding 2.	0.721
ENSCAPP00000011786	LMO4	ENSCAPP00000011786	ENSCAPP00000002028	annotation not available	LIM domain only 4.	0.542
ENSCAPP00000011786	TCF3	ENSCAPP00000011786	ENSCAPP00000002686	annotation not available	Transcription factor 3.	0.633
ENSCAPP00000012173	ENSCAPP00000016206	ENSCAPP00000012173	ENSCAPP00000016206	annotation not available	annotation not available	0.448
ENSCAPP00000012173	LDB1	ENSCAPP00000012173	ENSCAPP00000007918	annotation not available	LIM domain binding 1.	0.605
ENSCAPP00000012173	LDB2	ENSCAPP00000012173	ENSCAPP00000007810	annotation not available	LIM domain binding 2.	0.520
ENSCAPP00000012173	LMO4	ENSCAPP00000012173	ENSCAPP00000002028	annotation not available	LIM domain only 4.	0.612
ENSCAPP00000012173	SSBP2	ENSCAPP00000012173	ENSCAPP00000015338	annotation not available	Single stranded DNA binding protein 2.	0.448
ENSCAPP00000016206	ENSCAPP00000012173	ENSCAPP00000016206	ENSCAPP00000012173	annotation not available	annotation not available	0.448
ENSCAPP00000016206	LDB1	ENSCAPP00000016206	ENSCAPP00000007918	annotation not available	LIM domain binding 1.	0.684
ENSCAPP00000016206	LDB2	ENSCAPP00000016206	ENSCAPP00000007810	annotation not available	LIM domain binding 2.	0.675
ENSCAPP00000016206	LMO4	ENSCAPP00000016206	ENSCAPP00000002028	annotation not available	LIM domain only 4.	0.551
ENSCAPP00000016206	SSBP2	ENSCAPP00000016206	ENSCAPP00000015338	annotation not available	Single stranded DNA binding protein 2.	0.548
LDB1	ENSCAPP00000011786	ENSCAPP00000007918	ENSCAPP00000011786	LIM domain binding 1.	annotation not available	0.914
LDB1	ENSCAPP00000012173	ENSCAPP00000007918	ENSCAPP00000012173	LIM domain binding 1.	annotation not available	0.605
LDB1	ENSCAPP00000016206	ENSCAPP00000007918	ENSCAPP00000016206	LIM domain binding 1.	annotation not available	0.684
LDB1	LMO4	ENSCAPP00000007918	ENSCAPP00000002028	LIM domain binding 1.	LIM domain only 4.	0.883
LDB1	SSBP2	ENSCAPP00000007918	ENSCAPP00000015338	LIM domain binding 1.	Single stranded DNA binding protein 2.	0.955