BDH1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BDH1

3-hydroxybutyrate dehydrogenase 1. (343 aa)

Predicted Functional Partners:

OXCT1

0.968

AACS

0.932

BDH2

0.919

HMGCLL1

0.905

HMGCL

0.905

ENSCAPP00000006738

0.696

ZDHHC19

0.682

BCO1

0.676

ACAT1

0.646

HSD11B1

0.630

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AACS	ACAT1	ENSCAPP00000009279	ENSCAPP00000015745	acetoacetyl-CoA synthetase.	acetyl-CoA acetyltransferase 1.	0.940
AACS	BDH1	ENSCAPP00000009279	ENSCAPP00000002033	acetoacetyl-CoA synthetase.	3-hydroxybutyrate dehydrogenase 1.	0.932
AACS	BDH2	ENSCAPP00000009279	ENSCAPP00000002447	acetoacetyl-CoA synthetase.	3-hydroxybutyrate dehydrogenase 2.	0.877
AACS	ENSCAPP00000006738	ENSCAPP00000009279	ENSCAPP00000006738	acetoacetyl-CoA synthetase.	annotation not available	0.521
AACS	HMGCL	ENSCAPP00000009279	ENSCAPP00000013725	acetoacetyl-CoA synthetase.	3-hydroxy-3-methylglutaryl-CoA lyase.	0.876
AACS	HMGCLL1	ENSCAPP00000009279	ENSCAPP00000004177	acetoacetyl-CoA synthetase.	3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1.	0.876
AACS	OXCT1	ENSCAPP00000009279	ENSCAPP00000003912	acetoacetyl-CoA synthetase.	3-oxoacid CoA-transferase 1.	0.944
ACAT1	AACS	ENSCAPP00000015745	ENSCAPP00000009279	acetyl-CoA acetyltransferase 1.	acetoacetyl-CoA synthetase.	0.940
ACAT1	BDH1	ENSCAPP00000015745	ENSCAPP00000002033	acetyl-CoA acetyltransferase 1.	3-hydroxybutyrate dehydrogenase 1.	0.646
ACAT1	BDH2	ENSCAPP00000015745	ENSCAPP00000002447	acetyl-CoA acetyltransferase 1.	3-hydroxybutyrate dehydrogenase 2.	0.711
ACAT1	ENSCAPP00000006738	ENSCAPP00000015745	ENSCAPP00000006738	acetyl-CoA acetyltransferase 1.	annotation not available	0.972
ACAT1	HMGCL	ENSCAPP00000015745	ENSCAPP00000013725	acetyl-CoA acetyltransferase 1.	3-hydroxy-3-methylglutaryl-CoA lyase.	0.913
ACAT1	HMGCLL1	ENSCAPP00000015745	ENSCAPP00000004177	acetyl-CoA acetyltransferase 1.	3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1.	0.913
ACAT1	HSD11B1	ENSCAPP00000015745	ENSCAPP00000010258	acetyl-CoA acetyltransferase 1.	Hydroxysteroid 11-beta dehydrogenase 1.	0.554
ACAT1	OXCT1	ENSCAPP00000015745	ENSCAPP00000003912	acetyl-CoA acetyltransferase 1.	3-oxoacid CoA-transferase 1.	0.970
BCO1	BDH1	ENSCAPP00000007414	ENSCAPP00000002033	Beta-carotene oxygenase 1.	3-hydroxybutyrate dehydrogenase 1.	0.676
BCO1	HSD11B1	ENSCAPP00000007414	ENSCAPP00000010258	Beta-carotene oxygenase 1.	Hydroxysteroid 11-beta dehydrogenase 1.	0.436
BDH1	AACS	ENSCAPP00000002033	ENSCAPP00000009279	3-hydroxybutyrate dehydrogenase 1.	acetoacetyl-CoA synthetase.	0.932
BDH1	ACAT1	ENSCAPP00000002033	ENSCAPP00000015745	3-hydroxybutyrate dehydrogenase 1.	acetyl-CoA acetyltransferase 1.	0.646
BDH1	BCO1	ENSCAPP00000002033	ENSCAPP00000007414	3-hydroxybutyrate dehydrogenase 1.	Beta-carotene oxygenase 1.	0.676