SCLY protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SCLY

Selenocysteine lyase. (415 aa)

Predicted Functional Partners:

ISCU

0.993

SEPHS1

0.980

FXN

0.970

ENSCAPP00000001262

0.956

SEPHS2

0.945

ENSCAPP00000016271

0.943

TXNRD1

0.935

FDX1

0.933

NFU1

0.928

ENSCAPP00000002434

0.878

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000001262	ENSCAPP00000016271	ENSCAPP00000001262	ENSCAPP00000016271	annotation not available	annotation not available	0.990
ENSCAPP00000001262	FDX1	ENSCAPP00000001262	ENSCAPP00000006164	annotation not available	Ferredoxin 1.	0.905
ENSCAPP00000001262	FXN	ENSCAPP00000001262	ENSCAPP00000003299	annotation not available	Frataxin.	0.998
ENSCAPP00000001262	ISCU	ENSCAPP00000001262	ENSCAPP00000013312	annotation not available	Iron-sulfur cluster assembly enzyme.	0.998
ENSCAPP00000001262	NFU1	ENSCAPP00000001262	ENSCAPP00000005112	annotation not available	NFU1 iron-sulfur cluster scaffold.	0.779
ENSCAPP00000001262	SCLY	ENSCAPP00000001262	ENSCAPP00000002035	annotation not available	Selenocysteine lyase.	0.956
ENSCAPP00000002434	ENSCAPP00000016271	ENSCAPP00000002434	ENSCAPP00000016271	annotation not available	annotation not available	0.502
ENSCAPP00000002434	SCLY	ENSCAPP00000002434	ENSCAPP00000002035	annotation not available	Selenocysteine lyase.	0.878
ENSCAPP00000002434	SEPHS1	ENSCAPP00000002434	ENSCAPP00000001598	annotation not available	Selenophosphate synthetase 1.	0.878
ENSCAPP00000002434	SEPHS2	ENSCAPP00000002434	ENSCAPP00000016332	annotation not available	Selenophosphate synthetase 2.	0.900
ENSCAPP00000002434	TXNRD1	ENSCAPP00000002434	ENSCAPP00000011738	annotation not available	Thioredoxin reductase 1.	0.868
ENSCAPP00000016271	ENSCAPP00000001262	ENSCAPP00000016271	ENSCAPP00000001262	annotation not available	annotation not available	0.990
ENSCAPP00000016271	ENSCAPP00000002434	ENSCAPP00000016271	ENSCAPP00000002434	annotation not available	annotation not available	0.502
ENSCAPP00000016271	FDX1	ENSCAPP00000016271	ENSCAPP00000006164	annotation not available	Ferredoxin 1.	0.976
ENSCAPP00000016271	FXN	ENSCAPP00000016271	ENSCAPP00000003299	annotation not available	Frataxin.	0.822
ENSCAPP00000016271	ISCU	ENSCAPP00000016271	ENSCAPP00000013312	annotation not available	Iron-sulfur cluster assembly enzyme.	0.887
ENSCAPP00000016271	NFU1	ENSCAPP00000016271	ENSCAPP00000005112	annotation not available	NFU1 iron-sulfur cluster scaffold.	0.821
ENSCAPP00000016271	SCLY	ENSCAPP00000016271	ENSCAPP00000002035	annotation not available	Selenocysteine lyase.	0.943
ENSCAPP00000016271	TXNRD1	ENSCAPP00000016271	ENSCAPP00000011738	annotation not available	Thioredoxin reductase 1.	0.502
FDX1	ENSCAPP00000001262	ENSCAPP00000006164	ENSCAPP00000001262	Ferredoxin 1.	annotation not available	0.905