Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL25A1Collagen type XXV alpha 1 chain. (451 aa)    
Predicted Functional Partners:
PADI3
Peptidyl arginine deiminase 3.
      
 0.943
NLGN1
Neuroligin 1.
    
 
 0.915
ENSCAPP00000018226
annotation not available
 
  
 0.906
APP
Amyloid beta precursor protein.
    
 0.829
PLK3
Polo like kinase 3.
    
 0.772
COL26A1
Collagen type XXVI alpha 1 chain.
     
 0.758
COL23A1
Collagen type XXIII alpha 1 chain.
     
 0.741
ENSCAPP00000018083
annotation not available
 
  
0.717
COL6A2
Collagen type VI alpha 2 chain.
   
 0.686
FURIN
Furin, paired basic amino acid cleaving enzyme.
    
 0.683
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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