PAK1IP1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

PAK1IP1

PAK1 interacting protein 1. (354 aa)

Predicted Functional Partners:

WDR12

0.991

ENSCAPP00000001460

0.988

RPF2

0.986

ENSCAPP00000014188

0.985

RRP15

0.975

ENSCAPP00000010582

0.970

DDX18

0.968

ENSCAPP00000011601

0.963

ENSCAPP00000010755

0.958

GTPBP4

0.956

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX18	ENSCAPP00000001460	ENSCAPP00000001910	ENSCAPP00000001460	DEAD-box helicase 18.	annotation not available	0.995
DDX18	ENSCAPP00000010582	ENSCAPP00000001910	ENSCAPP00000010582	DEAD-box helicase 18.	annotation not available	0.996
DDX18	ENSCAPP00000010755	ENSCAPP00000001910	ENSCAPP00000010755	DEAD-box helicase 18.	annotation not available	0.990
DDX18	ENSCAPP00000011601	ENSCAPP00000001910	ENSCAPP00000011601	DEAD-box helicase 18.	annotation not available	0.994
DDX18	ENSCAPP00000014188	ENSCAPP00000001910	ENSCAPP00000014188	DEAD-box helicase 18.	annotation not available	0.996
DDX18	GTPBP4	ENSCAPP00000001910	ENSCAPP00000001224	DEAD-box helicase 18.	GTP binding protein 4.	0.997
DDX18	PAK1IP1	ENSCAPP00000001910	ENSCAPP00000002057	DEAD-box helicase 18.	PAK1 interacting protein 1.	0.968
DDX18	RPF2	ENSCAPP00000001910	ENSCAPP00000013679	DEAD-box helicase 18.	Ribosome production factor 2 homolog.	0.996
DDX18	RRP15	ENSCAPP00000001910	ENSCAPP00000012320	DEAD-box helicase 18.	Ribosomal RNA processing 15 homolog.	0.970
DDX18	WDR12	ENSCAPP00000001910	ENSCAPP00000017187	DEAD-box helicase 18.	WD repeat domain 12.	0.997
ENSCAPP00000001460	DDX18	ENSCAPP00000001460	ENSCAPP00000001910	annotation not available	DEAD-box helicase 18.	0.995
ENSCAPP00000001460	ENSCAPP00000010582	ENSCAPP00000001460	ENSCAPP00000010582	annotation not available	annotation not available	0.995
ENSCAPP00000001460	ENSCAPP00000010755	ENSCAPP00000001460	ENSCAPP00000010755	annotation not available	annotation not available	0.983
ENSCAPP00000001460	ENSCAPP00000011601	ENSCAPP00000001460	ENSCAPP00000011601	annotation not available	annotation not available	0.998
ENSCAPP00000001460	ENSCAPP00000014188	ENSCAPP00000001460	ENSCAPP00000014188	annotation not available	annotation not available	0.995
ENSCAPP00000001460	GTPBP4	ENSCAPP00000001460	ENSCAPP00000001224	annotation not available	GTP binding protein 4.	0.999
ENSCAPP00000001460	PAK1IP1	ENSCAPP00000001460	ENSCAPP00000002057	annotation not available	PAK1 interacting protein 1.	0.988
ENSCAPP00000001460	RPF2	ENSCAPP00000001460	ENSCAPP00000013679	annotation not available	Ribosome production factor 2 homolog.	0.998
ENSCAPP00000001460	RRP15	ENSCAPP00000001460	ENSCAPP00000012320	annotation not available	Ribosomal RNA processing 15 homolog.	0.995
ENSCAPP00000001460	WDR12	ENSCAPP00000001460	ENSCAPP00000017187	annotation not available	WD repeat domain 12.	0.995