Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF167Ring finger protein 167. (311 aa)    
Predicted Functional Partners:
ENSCAPP00000011901
annotation not available
    
 
 0.905
AP3D1
Adaptor related protein complex 3 subunit delta 1.
    
   0.783
CACNA2D3
Calcium voltage-gated channel auxiliary subunit alpha2delta 3.
      
 0.690
SLC22A18
Solute carrier family 22 member 18.
    
 
 0.678
RNF146
Ring finger protein 146.
      
 0.662
ENSCAPP00000005614
annotation not available
    
   0.641
ENSCAPP00000000972
annotation not available
    
 
 0.604
ENSCAPP00000004313
annotation not available
    
 
 0.604
ENSCAPP00000008606
annotation not available
    
 
 0.604
UBE2D2
Ubiquitin conjugating enzyme E2 D2.
    
 
 0.604
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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