Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPICSpi-C transcription factor. (261 aa)    
Predicted Functional Partners:
TTR
Transthyretin.
      
 0.865
IDH2
Isocitrate dehydrogenase (NADP(+)) 2.
      
 0.857
ASTL
Astacin like metalloendopeptidase.
      
 0.691
SCN1B
Sodium voltage-gated channel beta subunit 1.
      
 0.666
SRF
Serum response factor.
     
 0.663
ENSCAPP00000000033
annotation not available
    
 0.548
RUNX2
RUNX family transcription factor 2.
    
 0.548
RUNX3
RUNX family transcription factor 3.
    
 0.548
HPX
Hemopexin.
    
 
 0.537
C5orf30
Chromosome 5 open reading frame 30.
    
   0.525
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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