STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000002089annotation not available (234 aa)    
Predicted Functional Partners:
ENSCAPP00000005080
annotation not available
 
     0.943
RNF8
Ring finger protein 8.
   
 0.883
ENSCAPP00000013515
annotation not available
 
     0.874
UBE3A
Ubiquitin protein ligase E3A.
   
 0.847
ENSCAPP00000007687
annotation not available
    
 
 0.821
ENSCAPP00000013163
annotation not available
    
 0.817
TP53
Tumor protein p53.
   
 
 0.809
BIRC6
Baculoviral IAP repeat containing 6.
   
 0.747
MAPK6
Mitogen-activated protein kinase 6.
    
 
 0.741
NCOA4
Nuclear receptor coactivator 4.
    
 
 0.738
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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