Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VTNVitronectin. (478 aa)    
Predicted Functional Partners:
SERPINE1
Serpin family E member 1.
   
 0.996
ENSCAPP00000000830
annotation not available
    
 0.994
ITGAV
Integrin subunit alpha V.
    
 0.992
ITGB1
Integrin subunit beta 1.
    
 0.968
ENSCAPP00000016185
annotation not available
    
 0.967
ITGA5
Integrin subunit alpha 5.
    
 0.963
PLAU
Plasminogen activator, urokinase.
    
 0.961
ITGB5
Integrin subunit beta 5.
    
 0.960
ITGB8
Integrin subunit beta 8.
    
 0.957
ITGA2B
Integrin subunit alpha 2b.
    
 0.952
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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