Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THBS1Thrombospondin 1. (1149 aa)    
Predicted Functional Partners:
ENSCAPP00000016185
annotation not available
   
 0.986
ENSCAPP00000016364
annotation not available
   
 0.973
CD36
CD36 molecule.
    
 0.970
MMP2
Matrix metallopeptidase 2.
    
 0.964
SDC1
Syndecan 1.
    
 0.962
ENSCAPP00000014476
annotation not available
    
 0.961
FGB
Fibrinogen beta chain.
    
 0.959
FGG
Fibrinogen gamma chain.
   
 0.959
ENSCAPP00000017228
annotation not available
    
 0.958
FN1
Fibronectin 1.
    
 0.957
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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