STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000002117annotation not available (833 aa)    
Predicted Functional Partners:
DCP2
Decapping mRNA 2.
   
 0.999
XRN2
5'-3' exoribonuclease 2.
  
 
0.993
LSM1
LSM1 homolog, mRNA degradation associated.
    
 0.992
ENSCAPP00000009825
annotation not available
    
 
 0.992
ZFP36L1
ZFP36 ring finger protein like 1.
   
 0.989
ENSCAPP00000000451
annotation not available
   
 
 0.986
PATL1
PAT1 homolog 1, processing body mRNA decay factor.
   
 0.985
UPF1
UPF1 RNA helicase and ATPase.
    
 
 0.984
DCP1B
Decapping mRNA 1B.
    
 0.981
ENSCAPP00000013546
annotation not available
    
 0.975
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.