STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000002117annotation not available (833 aa)    
Predicted Functional Partners:
DCP1B
Decapping mRNA 1B.
    
 0.999
DCP2
Decapping mRNA 2.
   
 0.998
XRN2
5'-3' exoribonuclease 2.
  
 
0.988
LSM1
LSM1 homolog, mRNA degradation associated.
    
 0.973
PATL1
PAT1 homolog 1, processing body mRNA decay factor.
    
 0.973
LSM3
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.953
RACK1
Receptor for activated C kinase 1.
    
 
 0.941
C19orf54
Chromosome 19 open reading frame 54.
    
 0.940
ENSCAPP00000000576
annotation not available
    
 0.938
ENSCAPP00000004781
annotation not available
    
 0.938
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.