STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZC3H8Zinc finger CCCH-type containing 8. (240 aa)    
Predicted Functional Partners:
LARP7
La ribonucleoprotein 7, transcriptional regulator.
   
  0.961
ZCRB1
Zinc finger CCHC-type and RNA binding motif containing 1.
    
  0.960
TUBA8
Tubulin alpha 8.
   
   0.957
ICE2
Interactor of little elongation complex ELL subunit 2.
     
 0.955
WDR82
WD repeat domain 82.
   
 0.919
CPSF1
Cleavage and polyadenylation specific factor 1.
   
 0.859
CPSF3
Cleavage and polyadenylation specific factor 3.
   
 0.849
WDR33
WD repeat domain 33.
    
 0.847
ENSCAPP00000002198
annotation not available
    
 0.847
ENSCAPP00000007721
annotation not available
    
 0.847
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.