TNPO1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TNPO1

Transportin 1. (794 aa)

Predicted Functional Partners:

FUS

0.965

HNRNPM

0.935

BAP1

0.889

ZC3H14

0.862

ADGRB1

0.824

ENSCAPP00000016784

0.824

ADGRB2

0.824

NUP98

0.809

KIF17

0.795

ENSCAPP00000001396

0.760

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRB1	NUP98	ENSCAPP00000001337	ENSCAPP00000003109	Adhesion G protein-coupled receptor B1.	Nucleoporin 98.	0.725
ADGRB1	TNPO1	ENSCAPP00000001337	ENSCAPP00000002175	Adhesion G protein-coupled receptor B1.	Transportin 1.	0.824
ADGRB2	NUP98	ENSCAPP00000017112	ENSCAPP00000003109	Adhesion G protein-coupled receptor B2.	Nucleoporin 98.	0.725
ADGRB2	TNPO1	ENSCAPP00000017112	ENSCAPP00000002175	Adhesion G protein-coupled receptor B2.	Transportin 1.	0.824
BAP1	TNPO1	ENSCAPP00000016694	ENSCAPP00000002175	BRCA1 associated protein 1.	Transportin 1.	0.889
ENSCAPP00000001396	FUS	ENSCAPP00000001396	ENSCAPP00000001751	annotation not available	FUS RNA binding protein.	0.720
ENSCAPP00000001396	HNRNPM	ENSCAPP00000001396	ENSCAPP00000010194	annotation not available	Heterogeneous nuclear ribonucleoprotein M.	0.931
ENSCAPP00000001396	TNPO1	ENSCAPP00000001396	ENSCAPP00000002175	annotation not available	Transportin 1.	0.760
ENSCAPP00000016784	NUP98	ENSCAPP00000016784	ENSCAPP00000003109	annotation not available	Nucleoporin 98.	0.725
ENSCAPP00000016784	TNPO1	ENSCAPP00000016784	ENSCAPP00000002175	annotation not available	Transportin 1.	0.824
FUS	ENSCAPP00000001396	ENSCAPP00000001751	ENSCAPP00000001396	FUS RNA binding protein.	annotation not available	0.720
FUS	HNRNPM	ENSCAPP00000001751	ENSCAPP00000010194	FUS RNA binding protein.	Heterogeneous nuclear ribonucleoprotein M.	0.761
FUS	TNPO1	ENSCAPP00000001751	ENSCAPP00000002175	FUS RNA binding protein.	Transportin 1.	0.965
HNRNPM	ENSCAPP00000001396	ENSCAPP00000010194	ENSCAPP00000001396	Heterogeneous nuclear ribonucleoprotein M.	annotation not available	0.931
HNRNPM	FUS	ENSCAPP00000010194	ENSCAPP00000001751	Heterogeneous nuclear ribonucleoprotein M.	FUS RNA binding protein.	0.761
HNRNPM	TNPO1	ENSCAPP00000010194	ENSCAPP00000002175	Heterogeneous nuclear ribonucleoprotein M.	Transportin 1.	0.935
HNRNPM	ZC3H14	ENSCAPP00000010194	ENSCAPP00000008855	Heterogeneous nuclear ribonucleoprotein M.	Zinc finger CCCH-type containing 14.	0.438
KIF17	TNPO1	ENSCAPP00000015928	ENSCAPP00000002175	Kinesin family member 17.	Transportin 1.	0.795
NUP98	ADGRB1	ENSCAPP00000003109	ENSCAPP00000001337	Nucleoporin 98.	Adhesion G protein-coupled receptor B1.	0.725
NUP98	ADGRB2	ENSCAPP00000003109	ENSCAPP00000017112	Nucleoporin 98.	Adhesion G protein-coupled receptor B2.	0.725