STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000002181annotation not available (74 aa)    
Predicted Functional Partners:
DERL1
Derlin 1.
    
 0.974
UBE2J2
Ubiquitin conjugating enzyme E2 J2.
    
 0.895
CCDC102A
Coiled-coil domain containing 102A.
      
 0.760
DENND4B
DENN domain containing 4B.
      
 0.760
RNF5
Ring finger protein 5.
      
 0.751
DERL2
Derlin 2.
    
 0.724
BMS1
BMS1 ribosome biogenesis factor.
      
 0.667
SEL1L
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 
 0.667
ENSCAPP00000017700
annotation not available
    
 0.651
C1QTNF12
C1q and TNF related 12.
    
 0.634
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.