STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NUDT7Nudix hydrolase 7. (256 aa)    
Predicted Functional Partners:
PMPCA
Peptidase, mitochondrial processing alpha subunit.
   
   0.911
NUDT12
Nudix hydrolase 12.
   
 0.831
ENSCAPP00000007718
annotation not available
  
 
 0.712
ENSCAPP00000000451
annotation not available
  
 0.693
DCP1B
Decapping mRNA 1B.
    
 0.682
CROT
Carnitine O-octanoyltransferase.
   
 
 0.668
PATL1
PAT1 homolog 1, processing body mRNA decay factor.
    
 0.664
GNPAT
Glyceronephosphate O-acyltransferase.
     
 0.642
PEX12
Peroxisomal biogenesis factor 12.
   
 
 0.638
RRM1
Ribonucleotide reductase catalytic subunit M1.
    
 0.625
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.