STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC16ASEC16 homolog A, endoplasmic reticulum export factor. (2347 aa)    
Predicted Functional Partners:
ENSCAPP00000011033
annotation not available
   
 0.995
SEC24B
SEC24 homolog B, COPII coat complex component.
   
 0.986
SEC24D
SEC24 homolog D, COPII coat complex component.
   
 0.982
SEC13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.981
SEC24A
SEC24 homolog A, COPII coat complex component.
   
 0.979
SEC23A
Sec23 homolog A, coat complex II component.
   
 0.939
SEC23B
SEC23 homolog B, coat complex II component.
   
 0.939
ENSCAPP00000008248
annotation not available
   
 0.924
ANKRD40
Ankyrin repeat domain 40.
   
 0.861
SAR1A
Secretion associated Ras related GTPase 1A.
    
 0.843
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.